Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility
文献类型: 外文期刊
作者: Xu, Ming-Min 1 ; Gu, Li-Hong 4 ; Lv, Wan-Yue 1 ; Duan, Sheng-Chang 6 ; Li, Lian-Wei 3 ; Du, Yuan 6 ; Lu, Li-Zhi 8 ; Zeng, Tao 8 ; Hou, Zhuo-Cheng 9 ; Ma, Zhanshan Sam 3 ; Chen, Wei 11 ; Adeola, Adeniyi C. 1 ; Han, Jian-Lin 13 ; Xu, Tie-Shan 15 ; Dong, Yang 11 ; Zhang, Ya-Ping 1 ; Peng, Min-Sheng 1 ;
作者机构: 1.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Peoples R China
2.Chinese Acad Sci, Kunming Inst Zool, Yunnan Lab Mol Biol Domest Anim, Kunming 650223, Peoples R China
3.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650204, Peoples R China
4.Hainan Acad Agr Sci, Inst Anim Sci & Vet Med, Haikou 571100, Peoples R China
5.Yunnan Univ, State Key Lab Conservat & Utilizat Bioresources Yu, Kunming 650091, Peoples R China
6.Nowbio Biotechnol Co, Kunming 650201, Peoples R China
7.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Computat Biol & Med Ecol Lab, Kunming 650223, Peoples R China
8.Zhejiang Acad Agr Sci, Inst Anim Husb & Vet Sci, Hangzhou 310021, Peoples R China
9.China Agr Univ, Coll Anim Sci & Technol, Natl Engn Lab Anim Breeding, MARA, Beijing 100193, Peoples R China
10.China Agr Univ, Coll Anim Sci & Technol, Key Lab Anim Genet Breeding & Reprod, MARA, Beijing 100193, Peoples R China
11.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources Yu, Kunming 650201, Peoples R China
12.Yunnan Agr Univ, Minist Educ, Key Lab Agrobiodivers & Pest Control, Kunming 650201, Peoples R China
13.Chinese Acad Agr Sci CAAS, Inst Anim Sci, CAAS ILRI Joint Lab Livestock & Forage Genet Resou, Beijing 100193, Peoples R China
14.Int Livestock Res Inst ILRI, Livestock Genet Program, Nairobi 00100, Kenya
15.Chinese Acad Trop Agr Sci, Trop Crops Genet Resources Res Inst, Haikou 571101, Peoples R China
16.Chinese Acad Sci, Kunming Inst Zool, KIZ CUHK Joint Lab Bioresources & Mol Res Common D, Kunming 650223, Peoples R China
关键词: Fatty liver; Muscovy duck; Genome assembly; Evolutionary by-product; Accelerated CNEs
期刊名称:GENOMICS ( 影响因子:4.31; 五年影响因子:4.38 )
ISSN: 0888-7543
年卷期: 2022 年 114 卷 6 期
页码:
收录情况: SCI
摘要: The Muscovy duck (Cairina moschata) is an economically important poultry species, which is susceptible to fatty liver. Thus, the Muscovy duck may serve as an excellent candidate animal model of non-alcoholic fatty liver disease. However, the mechanisms underlying fatty liver development in this species are poorly understood. In this study, we report a chromosome-level genome assembly of the Muscovy duck, with a contig N50 of 11.8 Mb and scaffold N50 of 83.16 Mb. The susceptibility of Muscovy duck to fatty liver was mainly attributed to weak lipid catabolism capabilities (fatty acid beta-oxidation and lipolysis). Furthermore, conserved noncoding elements (CNEs) showing accelerated evolution contributed to fatty liver formation by down-regulating the expression of genes involved in hepatic lipid catabolism. We propose that the susceptibility of Muscovy duck to fatty liver is an evolutionary by-product. In conclusion, this study revealed the potential mechanisms underlying the susceptibility of Muscovy duck to fatty liver.
- 相关文献
作者其他论文 更多>>
-
Analysis of genome and methylation changes in Chinese indigenous chickens over time provides insight into species conservation
作者:Zeng, Tao;Tian, Yong;Gu, Tiantian;Chen, Li;Xu, Wenwu;Cao, Yongqing;Li, Guoqin;Tao, Zhengrong;Shen, Junda;Lu, Lizhi;Yin, Jianmei;Li, Guohui;Qu, Liang;Xue, Qian;Zhang, Huiyong;Zhou, Chenghao;Han, Wei;Yin, Jianmei;Li, Guohui;Qu, Liang;Xue, Qian;Zhang, Huiyong;Zhou, Chenghao;Han, Wei;Feng, Peishi;Han, Feiran;Xu, Yuhui;Wang, Yuntong;Liu, Yali;Liu, Lijun;Gu, Lihong;Wei, Qingyu;Li, Peifeng
关键词:
-
IDENTIFICATION OF RICE ROOT KNOT NEMATODE IN HAINAN AND CLONING, LOCALIZATION AND SILENCING ANALYSIS OF FLP GENES
作者:Fu, Meiying;Luo, Jiguang;Rui, Kai;Wang, Huifang;Ji, Xuncong;Chen, Miancai;Zeng, Tao
关键词:Meloidogyne graminicola; Identification; Cloning; In situ hybridization; RNAi
-
Gene expression profiling in Pekin duck embryonic breast muscle
作者:Xu, Tie-Shan;Xia, Wan-Liang;Zhang, Ya-Ge;Rong, Guang;Gu, Li-Hong;Huang, Wei;Zhang, Yun-Sheng;Hou, Shui-Sheng;Schachtschneider, Kyle
关键词:
-
Kynurenine pathway as alternative biosynthetic pathway for fusaric acid in Fusarium oxysporum f.sp. cubense
作者:Zeng, Tao;Hu, Xin-Wen;Zeng, Hui-Cai;Guo, Jian-Chun;Fu, Mei-Ying;Huang, Kai-Kun
关键词:Banana fusarium wilt; Fusaric acid; FUB gene cluster; Kynurenine pathway; Beauverin