文献类型： 外文期刊

作者： Qiao, Weihua ¹ ; Qi, Lan ¹ ; Cheng, Zhijun ¹ ; Su, Long ¹ ; Li, Jing ¹ ; Sun, Yan ¹ ; Ren, Junfang ³ ; Zheng, Xiaoming ¹ ; Y ¹ ;

作者机构： 1.Chinese Acad Agr Sci, Inst Crop Sci, 12 Zhongguancun South St, Beijing 100081, Haidian, Peoples R China

2.Hainan Acad Agr Sci, Inst Cereal Crop Sci, 14 Xingdan Rd, Haikou 571100, Hainan, Peoples R China

3.Hainan Acad Agr Sci, Inst Trop Hort, 14 Xingdan Rd, Haikou 571100, Hainan, Peoples R C

关键词： Chromosome segment substitution lines;Oryza rufipogon;Quantitative trait locus

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2016 年 17 卷

页码：

收录情况： SCI

摘要： Background: Wild rice (Oryza rufipogon) constitutes a primary gene source for rice breed improvement. Chromosome segment substitution line (CSSL) for O. rufipogon is a powerful tool for fine mapping of quantitative traits, new gene discovery, and marker-assisted breeding. Thus, they provide a basis for a wide range of genomic and genetic studies. Results: In this study, a set of 198 CSSLs were developed from a cross between recurrent parent indica var. 9311 and an O. rufipogon donor parent; these were then genotyped using 313 polymorphic SSR markers evenly distributed across the 12 rice chromosomes. On average, each CSSL carried 2.16 introgressed segments, and the genetic distance of each segment was about 6 cM. The segments collectively covered 84.9 % of the wild rice genome. Based on these CSSLs, 25 QTLs involved in 10 agronomic traits were identified. Seven CSSLs were subjected to a whole-genome single nucleotide polymorphism chip assay and two QTLs, qSH4-1 and qDTH10-1, detected. In addition, a new QTL associated with the heading date was detected in a 78-Kb region on chromosome 10, thus proving the ability of these CSSLs to identify new QTLs and genes. Conclusions: The newly developed CSSL population proved a useful tool for both gene identification and whole-genome research of wild rice. These CSSL materials will provide a foundation for rice variety improvement.